rs27866100 SNP Detail

Summary

• ID
  rs27866100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGGACGC TGGCTCCCCT
  TGGACACCTT AAGCCTTGCA GGAGCTGAAC CAGGCTAGAG AAGGGGTTGG CAGCGGTGGG
  CAGGAGGGGC CCCAGGCCGC TGGCCTGGGT GTGTGGGGGT CTTACCGCGG CTTGCTGGAA
  GGCGCCCTTG GTATAGGTGC CACCACCGCG GTAGGTGATG GCCGGGATCT CGCGGCTGAG
  Y
  AGCGCGCACT TGTGTTGGTG CGCGCGGCTG GTGGAGATGT AATCCACGCG CGCCACCACG
  TTGTTCTTGG ATGAGAAGGT GACGATGGCC ACACGCGTGG CCGTGGACAC CACGGGGAAG
  TCGGACAGCA GCTTGCGCAC GAACTTGAGC TCGTTGAGGA AGTTGGTTTG GCCCACGCTG
  GACGACTCGT CCACCAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015140	NES09395590	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	T	T	C	C	T	C	C
ss146390723	ENSMUSSNP1222774	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866100					SNP	C	C	T	T	T	T	T	C	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015140	NES09395590	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			within coordinates
Rr592872	regulatory region 592872			668 bp proximal
Rr592873	regulatory region 592873			724 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			405 bp downstream
Tssr41871	transcription start site region 41871			430 bp downstream
Tssr41872	transcription start site region 41872			586 bp downstream
Tssr41873	transcription start site region 41873			615 bp downstream
Tssr41874	transcription start site region 41874			640 bp downstream
Tssr41875	transcription start site region 41875			660 bp downstream
Tssr41876	transcription start site region 41876			681 bp downstream
Tssr41877	transcription start site region 41877			721 bp downstream
Tssr41878	transcription start site region 41878			752 bp downstream
Tssr41879	transcription start site region 41879			768 bp downstream
Tssr41880	transcription start site region 41880			850 bp downstream