rs27866098 SNP Detail

Summary

• ID
  rs27866098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58206329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACG GGCTGGAAGT TGGTCCAGCC
  Y
  GACACCAGTG CCAGAGCCCA GCAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38015138	NES09395592	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T		C	C	T	C		C
ss321137351	CHEV_4_58219201	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27866098					SNP	C	T	T	T	T	T	T	T	T	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015138	NES09395592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58206329 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr592872	regulatory region 592872			257 bp proximal
Rr592873	regulatory region 592873			313 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			within coordinates
Tssr41871	transcription start site region 41871			19 bp downstream
Tssr41872	transcription start site region 41872			175 bp downstream
Tssr41873	transcription start site region 41873			204 bp downstream
Tssr41874	transcription start site region 41874			229 bp downstream
Tssr41875	transcription start site region 41875			249 bp downstream
Tssr41876	transcription start site region 41876			270 bp downstream
Tssr41877	transcription start site region 41877			310 bp downstream
Tssr41878	transcription start site region 41878			341 bp downstream
Tssr41879	transcription start site region 41879			357 bp downstream
Tssr41880	transcription start site region 41880			439 bp downstream