rs27866095 SNP Detail

Summary

• ID
  rs27866095
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58206845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAGGG GGCAGTGAAG
  TCAGAGTCGC TTCCCTCCTT CTCTGTCTGT CCTCTCCTTC CTTTTCCCAC TCCTCTCCCT
  ATCTCTCCTC TATCTCTCTC CTCCCCCCTC TCTCTTGCCT GGGATCCAGC TAAAGACTCT
  TGGAGATTCC ATGACACCAG AACCCCTCGC CTGTCATGCT GTCAACATTC CCTCACAAGC
  K
  CACTGATTGA TCCCATATGT CTGGCAAGGA GCTGCGGAGG AATGCGCTGG AGATGGATGT
  GGATACCGAG AGTGCCACAG TAATTGGAAA CACTGGAGAA GAAAACACAC ACGCGGGGCT
  GGCAGAGTTG AAAGCATGCT TTGAAAACTG CTTGCTCACC TTTTGGGGTT CATTCCACTC
  TTGGGGGGTG GGGTGGGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38015135	NES09395491	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T	T	T	T	T		G	G	T	G		G
ss321137353	CHEV_4_58219717	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27866095					SNP	G	T	T	T	T	T	T	T	T	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015135	NES09395491	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58206845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	195 bp distal
Rr592872	regulatory region 592872	within coordinates
Rr592873	regulatory region 592873	182 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870	511 bp upstream
Tssr41871	transcription start site region 41871	486 bp upstream
Tssr41872	transcription start site region 41872	325 bp upstream
Tssr41873	transcription start site region 41873	301 bp upstream
Tssr41874	transcription start site region 41874	270 bp upstream
Tssr41875	transcription start site region 41875	258 bp upstream
Tssr41876	transcription start site region 41876	229 bp upstream
Tssr41877	transcription start site region 41877	197 bp upstream
Tssr41878	transcription start site region 41878	172 bp upstream
Tssr41879	transcription start site region 41879	148 bp upstream
Tssr41880	transcription start site region 41880	55 bp upstream