rs27866090 SNP Detail

Summary

• ID
  rs27866090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58207267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCACCCGTG CGCATCACAT ACGCAGAGTT ATCGTTCACC
  TTTCCCGCGG TTAATCATTC CTGTATTGTT CATTCTTTCC TCCACGTAGC AGCTTGCGAT
  R
  CTCTATAGGT AACACGAGCA GGGGAAAACT GACATGGACC TGTCCTCTAG GAACCTGTAG
  CAGGTAAAAG TGATGTCACC ATCAACTTGA TATTCATACG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015130	NES09395499	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866090					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015130	NES09395499	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58207267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	617 bp distal
Rr592872	regulatory region 592872	181 bp distal
Rr592873	regulatory region 592873	604 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	671 bp upstream
Tssr41870	transcription start site region 41870	933 bp upstream
Tssr41871	transcription start site region 41871	908 bp upstream
Tssr41872	transcription start site region 41872	747 bp upstream
Tssr41873	transcription start site region 41873	723 bp upstream
Tssr41874	transcription start site region 41874	692 bp upstream
Tssr41875	transcription start site region 41875	680 bp upstream
Tssr41876	transcription start site region 41876	651 bp upstream
Tssr41877	transcription start site region 41877	619 bp upstream
Tssr41878	transcription start site region 41878	594 bp upstream
Tssr41879	transcription start site region 41879	570 bp upstream
Tssr41880	transcription start site region 41880	477 bp upstream