rs27866089 SNP Detail

Summary

• ID
  rs27866089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58207290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGTTATC GTTCACCTTT CCCGCGGTTA ATCATTCCTG
  TATTGTTCAT TCTTTCCTCC ACGTAGCAGC TTGCGATGCT CTATAGGTAA CACGAGCAGG
  S
  GAAAACTGAC ATGGACCTGT CCTCTAGGAA CCTGTAGCAG GTAAAAGTGA TGTCACCATC
  AACTTGATAT TCATACGTGA AACGAATATG TATGATTACA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015129	NES09395501	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866089					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015129	NES09395501	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58207290 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	640 bp distal
Rr592872	regulatory region 592872	204 bp distal
Rr592873	regulatory region 592873	627 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	694 bp upstream
Tssr41870	transcription start site region 41870	956 bp upstream
Tssr41871	transcription start site region 41871	931 bp upstream
Tssr41872	transcription start site region 41872	770 bp upstream
Tssr41873	transcription start site region 41873	746 bp upstream
Tssr41874	transcription start site region 41874	715 bp upstream
Tssr41875	transcription start site region 41875	703 bp upstream
Tssr41876	transcription start site region 41876	674 bp upstream
Tssr41877	transcription start site region 41877	642 bp upstream
Tssr41878	transcription start site region 41878	617 bp upstream
Tssr41879	transcription start site region 41879	593 bp upstream
Tssr41880	transcription start site region 41880	500 bp upstream