rs27866088 SNP Detail

Summary

• ID
  rs27866088
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58207310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG GGAAAACTGA CATGGACCTG
  W
  CCTCTAGGAA CCTGTAGCAG GTAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38015128	NES09395507	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T	T	T	T		T	A	T	A		A
ss321137357	CHEV_4_58220182	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27866088					SNP	A	T	T	T	T	T	T	T	T	T	A	T	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015128	NES09395507	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58207310 () rs orientation: forward

Symbol	Name	Function Class
Rr592872	regulatory region 592872	224 bp distal
Rr592873	regulatory region 592873	647 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	714 bp upstream
Tssr41870	transcription start site region 41870	976 bp upstream
Tssr41871	transcription start site region 41871	951 bp upstream
Tssr41872	transcription start site region 41872	790 bp upstream
Tssr41873	transcription start site region 41873	766 bp upstream
Tssr41874	transcription start site region 41874	735 bp upstream
Tssr41875	transcription start site region 41875	723 bp upstream
Tssr41876	transcription start site region 41876	694 bp upstream
Tssr41877	transcription start site region 41877	662 bp upstream
Tssr41878	transcription start site region 41878	637 bp upstream
Tssr41879	transcription start site region 41879	613 bp upstream
Tssr41880	transcription start site region 41880	520 bp upstream