rs27866085 SNP Detail

Summary

• ID
  rs27866085
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58207616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TGTATATATG
  TGTGTATGTA TATATACATA TATATATGTA TACACACACA CAAAATTACA ACTGACCTTG
  CTTAAACAGA AGTTTGTCTT GCTTTCAAAG GCAAACTTGA CTTTAGCCAA GGCCAGGCAA
  GCCTTCTATG AGGACAGAAG TTTATGCTAA ATTTTGAACT ATAAGTAGAC ACCCTGTGAT
  M
  TTAACACCCT CCTCTTTTTA TTTGATGCAA CAGATTAGAT CGTCCTGGCA TATATACCCT
  TTGGAATACC AGCTGCTACT TGGAGTGATT TTTCCAATTA AGACCTCAAA GCTGTGCACG
  CTGAAGCACA TACTTATTAC ATGAAAGGCA GAGCCCTTGC CTAAAAGATT CCAGCTAGGA
  ATCAGGAACT CTGCGTAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015124	NES09395523	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866085					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015124	NES09395523	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58207616 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	966 bp distal
Rr592872	regulatory region 592872	530 bp distal
Rr592873	regulatory region 592873	953 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	1020 bp upstream
Tssr41870	transcription start site region 41870	1282 bp upstream
Tssr41871	transcription start site region 41871	1257 bp upstream
Tssr41872	transcription start site region 41872	1096 bp upstream
Tssr41873	transcription start site region 41873	1072 bp upstream
Tssr41874	transcription start site region 41874	1041 bp upstream
Tssr41875	transcription start site region 41875	1029 bp upstream
Tssr41876	transcription start site region 41876	1000 bp upstream
Tssr41877	transcription start site region 41877	968 bp upstream
Tssr41878	transcription start site region 41878	943 bp upstream
Tssr41879	transcription start site region 41879	919 bp upstream
Tssr41880	transcription start site region 41880	826 bp upstream