rs27866082 SNP Detail

Summary

• ID
  rs27866082
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58208239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTGTGT CAGTTTGCTC
  ATTTGGAAAA TGGAGGAATA ATAACATATC AAGGATTAAA TCATTAAATA GTAAAACTCT
  TAGGGATGTG TTCAGAACAC AGCATGTGCT CAATAAACGC TGGCCAGTCA CATCACTTCC
  TTTATTCATA ATGCTTTCCA AGTCCCATTT CCAGCACTGA TCATCAAGAA TGTACTTAGT
  Y
  GAATGCAAAA TACTAAAAAC TGAAAAGTGA GATGGGACCC CATTCCCGTC CTCCCAGTCA
  GGTTACTCCA GAAGAAAATG TAGATTTGAA CACTGCTCCA CAGTTGTCTA TGTGGAAGAG
  GGACAAGGAA CAGGGAGAAG AGAGACCTGG ATCTTCTGAG AAGGGCTAAG ATCTCATTTG
  ACTTGGAACT CTTCTAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38015121	NES09395463	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27866082					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38015121	NES09395463	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58208239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	1589 bp distal
Rr592872	regulatory region 592872	1153 bp distal
Rr592873	regulatory region 592873	1576 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	1643 bp upstream
Tssr41870	transcription start site region 41870	1905 bp upstream
Tssr41871	transcription start site region 41871	1880 bp upstream
Tssr41872	transcription start site region 41872	1719 bp upstream
Tssr41873	transcription start site region 41873	1695 bp upstream
Tssr41874	transcription start site region 41874	1664 bp upstream
Tssr41875	transcription start site region 41875	1652 bp upstream
Tssr41876	transcription start site region 41876	1623 bp upstream
Tssr41877	transcription start site region 41877	1591 bp upstream
Tssr41878	transcription start site region 41878	1566 bp upstream
Tssr41879	transcription start site region 41879	1542 bp upstream
Tssr41880	transcription start site region 41880	1449 bp upstream