rs27865936 SNP Detail

Summary

• ID
  rs27865936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59321867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGTAGGA ATGGAAAAGA
  ATGAGAGTCA TAATCAGTGG GTGGTGCTGG TGTCAGAGGT CTCAGGCAGA AGGCTGGGAA
  ACAACAGGGA ACCCTAGAAG AGCCACCAAT GGAAACACTA GGATTTCAAT GGAAACACTG
  TGCATTCAGA GGCAGGTCAG GTGGCCACAA GCTGGGATAA AGAGGGGAAA CCTGAACTTG
  Y
  GTGATGGGAG ATGAACCGGG AGGCTCTGCC ATCTATTTGT CTGTGCTGCG GGGATGAAGG
  CCTGAGCTCT GTGTGGACAG AAATGAAAGG CTCGCAGTGT GCAGGCTGAC AGAGAAGCGG
  GGAGTCACCA ATGCCTTGGG TTTCATGCCT GTGTCTGGAG AATGGTCCCC GATTATAGCT
  TGCCAGCATC TCCGTGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011271	NES09407163	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27865936					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011271	NES09407163	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59321867 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593038	regulatory region 593038			1724 bp distal
Rr593039	regulatory region 593039			within coordinates
Rr593040	regulatory region 593040			1356 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant