rs27865933 SNP Detail

Summary

• ID
  rs27865933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59321986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTTCAA TGGAAACACT
  GTGCATTCAG AGGCAGGTCA GGTGGCCACA AGCTGGGATA AAGAGGGGAA ACCTGAACTT
  GTGTGATGGG AGATGAACCG GGAGGCTCTG CCATCTATTT GTCTGTGCTG CGGGGATGAA
  GGCCTGAGCT CTGTGTGGAC AGAAATGAAA GGCTCGCAGT GTGCAGGCTG ACAGAGAAGC
  R
  GGGAGTCACC AATGCCTTGG GTTTCATGCC TGTGTCTGGA GAATGGTCCC CGATTATAGC
  TTGCCAGCAT CTCCGTGACT CAAGAGATCA CAGACTCACA GTACTTTGTG GCTGGGAGGA
  ATCTCAACCC AGGCAGAGGC GGCTGAGGAC TAGCCAAATT ACAAGACTCT GTGTGATCAG
  GGGCTTGCTG GAGTGAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011268	NES09407168	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27865933					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011268	NES09407168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59321986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593038	regulatory region 593038			1843 bp distal
Rr593039	regulatory region 593039			within coordinates
Rr593040	regulatory region 593040			1237 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant