rs27865692 SNP Detail

Summary

• ID
  rs27865692
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59370760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAAATCAA CATATCCAGC TTACTTTCTT ACATCACGGG
  CAGATGGGAG AACTGAGTGA GATATGGAAA TGTTGCCATA AAGCTGTGAC CTTTGTAGAC
  W
  GTCAGCGTGA CTTGGATGGG CCATAATAAA ATGTCCTGAA GCGTATCTGT GGACAGACAC
  CTTGAGAATG AGGGAAATGG TACATAAAAC TCCATGGGTT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38011023	NES09405055	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27865692					SNP	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38011023	NES09405055	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59370760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm12527	predicted gene 12527			1894 bp upstream
Rr593054	regulatory region 593054			1900 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant