rs27864535 SNP Detail

Summary

• ID
  rs27864535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59674460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GGGCTATGAG TACATTCTTA TGGATATATT CCTAATGAAT
  CTATTAATAT TTATCAGATT TTAAGCTGAG CTCTAAGCTT TTCCAATATG GTCAAGAATA
  Y
  AGGCTATGAA TATGAATATA TGCTGATGAA AACATGAATA TATTCTTGGT GAATATATTG
  ATATTCATTA AAATTTAAAC TAGGTTTTAA AATGTCCCAA T                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010063	NES09388453	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	C	T		C	C	C	C
ss146402926	ENSMUSSNP6999929	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27864535					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010063	NES09388453	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59674460 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
E130308A19Rik	RIKEN cDNA E130308A19 gene			Intron
				Noncoding-Transcript-Variant
Rr593108	regulatory region 593108			408 bp distal
Tssr37444	transcription start site region 37444			447 bp downstream