rs27864534 SNP Detail

Summary

• ID
  rs27864534
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59674790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATAACTT ATAAAAATGT
  TCATGAATAT ATTCATGTTC ATTAATTTTA AACTGTATTA AAAAAGTTTT CCCAACAGGG
  CAAGGAAGAA TGTATTCATG AATATATTCA TAAGGAGGAT ATATTCATGA ATATAATCAT
  TATAGAGAAT ATATTCACAT TTATTGAATA TGTTCACAAA GAATATATTC ACAGGAATGC
  W
  AGCTTATCCT AAAACCCTTT GCTTTTTTGC AATCCAGAGA GTTCCTAAAA GCTGTTGCAA
  AGCAGAGTGA AAAATCAGTG TGCTAAAATT TCACTCAAGT CTTCAAAAAG GGAAGAAGGT
  AAATTTGATA CATTCAGCAA ATTGGTCTGC TGATGAATTG GCTCCCAGCA AATGATTCTT
  GCAAATTAAT TTAGAGCCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010062	NES09388454	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27864534					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010062	NES09388454	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59674790 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
E130308A19Rik	RIKEN cDNA E130308A19 gene			Intron
				Noncoding-Transcript-Variant
Rr593108	regulatory region 593108			738 bp distal
Tssr37444	transcription start site region 37444			777 bp downstream