rs27863449 SNP Detail

Summary

• ID
  rs27863449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58660120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGAATC GTGAAGAGAG AAAATAGATT TTGTCCTTTT
  TGATGGTAAA AATGAGCAAG AAAATTTTAT GAACCAGGTT TGAAGACTCA ATGAAATAAT
  ATTAAGAATG TTGGTGATGT AGGCAGAAAA GATAAATAAT ACCAAAGACC AGAACAGACC
  Y
  AGGACATATG GAAATTCAGT ATGAAATCAT TTATTGCTTC TTATGGTTCT GAAATTCAGA
  TAATTCATAA TGAACTATTT CTACTTCAAG TGCTGCTGAC GAAGCAGCCA GGCTGGAGCT
  GGGGGCTCCA AGGTGGCTTT GACTACGTAC CTGGCATTTC ATGTGAGGAA ACTGGATGGT
  CTGGGGACTG GTTGAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38013172	NES09394063	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27863449					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013172	NES09394063	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58660120 () rs orientation: forward

Symbol	Name	Function Class
Gm12580	predicted gene 12580	1528 bp upstream
Rr592921	regulatory region 592921	459 bp proximal
Rr592922	regulatory region 592922	1838 bp proximal