rs27863448 SNP Detail

Summary

• ID
  rs27863448
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58661825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGGAAA ATTGTTGACC
  AGATAGTTTG ATGTTTAAGA ACATAGGAAG TTTTTTTTTT TTCTCCAAGT TTAAAGACCA
  AAGAAGGAGT CATAAAACAA GGAACTGATA AATTAGACAT CATGAAACAT GTTACATGGT
  ATTAGGTCAA GACCTTAACT ATAAGCTATA ATAATATTCA TCAATGAAGC CCAAGGCCAT
  W
  TCTCTCCATA TACAAAGCAC ATCGGTGTAT CTGGGGGTCT ACCTGGCAAG CTCTCCAGGA
  GAGGTAACCC CCACAGAAGC AGGCAGTGGA TGCAGGGAAG CAGGCATGAG GAACAATACT
  TAAGGAAATA GACAATCTGT GTAAGAAAGA AGCTCTGGTA AGCACATGGC TAGAATTTAG
  CCTCTCATGA CAGATAGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38013171	NES09393980	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27863448					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013171	NES09393980	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58661825 () rs orientation: forward

Symbol	Name	Function Class
Rr592921	regulatory region 592921	986 bp distal
Rr592922	regulatory region 592922	133 bp proximal
Rr592923	regulatory region 592923	1844 bp proximal