rs27863447 SNP Detail

Summary

• ID
  rs27863447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58662154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACAATCT GTGTAAGAAA
  GAAGCTCTGG TAAGCACATG GCTAGAATTT AGCCTCTCAT GACAGATAGG GGCTATTAAG
  ACAGCTGCAG TGTGATACTT CTCAACCGTT GTACAGAAGA CAACCGAGGA ACACCATCTG
  TGCTCTGCAG GCATGTCAGT TTCCACACTG CTGTGAGGGA TTTGCACTGC AGAACTAACC
  R
  CCCTTTCCTA TTTCTGCAGC ATAATTTAAT AGTATCAGTT TCTTGGCCCA GGAATTCCGT
  AGCTTTGTAA ATCCTCCAGT ATATACATGA ATTACACACA GAGGGACTCA CACACAAATG
  TTCCTTGTTA CAATATAGTT CTGTTCTGAT AAGCTCATTA TAACTTGAAA ATACTGGAAG
  TCAAAAATGC ATTTATCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38013170	NES09393981	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	G			A	A		G
ss146393883	ENSMUSSNP2972250	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
ss321138685	CHEV_4_58675026	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27863447					SNP	A	A	A	A	A	A	A	G	A	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013170	NES09393981	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58662154 () rs orientation: forward

Symbol	Name	Function Class
Rr592921	regulatory region 592921	1315 bp distal
Rr592922	regulatory region 592922	within coordinates
Rr592923	regulatory region 592923	1515 bp proximal