rs27863445 SNP Detail

Summary

• ID
  rs27863445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58663501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGAGTA TGGTGTCAAC
  CAGCTCTATG ACCTGCCTCC CAATTCCTGA CTGCCCAAGC CCCGTGGTGG CCCCAACAGC
  CTTACCTCTA GGAATCTAGA GATAGCATGG AAAACTGGGG GGTGGGTTAC TATATAATGT
  TAAAAGACTA TTGGATGTAT ACTTTGAAAA CTGTAAACAT GAATAAAAAG CTCATGGTAA
  Y
  ACATAAAAGT GACTTTACAA GCCTATCTGA TCTCAGCTAG AGAGATGTAT GTATGTGAAT
  ATCCAGTAGT TGCTGGGCTC TTGGTTACGT CTGTACTTTT AGTTAAGGCT ATGTGTTCCT
  GTCGTAATTA GAGAGAGGTA GAAAGTCATT AACAAACATG AATACATCTC ATTCAAATCC
  TTTAATTATG TGCATCTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38013168	NES09393929	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C		T
ss321138689	CHEV_4_58676373	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27863445					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013168	NES09393929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58663501 () rs orientation: forward

Symbol	Name	Function Class
Rr592922	regulatory region 592922	1216 bp distal
Rr592923	regulatory region 592923	168 bp proximal