rs27863444 SNP Detail

Summary

• ID
  rs27863444
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58663972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGGAC ATTTATCTGC
  GGAATTACTC AGAGCACATA TGAAATCAAT TACAGCCCCC AACTGGCTTA GGGAGCCTCT
  GTGTGCCTGC GGCCATCTCC ACAGCAAATT GTCTCAGCCA TGGTCAAAAT CAAAATTTCT
  CAGTTGCCTT GGTTGACCTA GAAATGTTTT ATGTAATTTG CTATTATCTG GAAGGAAAGC
  R
  GTTGTTTGAA AATAAATCTC TCTCTCTCTT TTTTTTTTTT TTTTAGTTTG TTAGTGTTGC
  CAAGAAATAT TCTTCATCCG TTAGACAGGC CAGGAAAAAA AAAGCTCAGT AAACAAATGG
  AATCTCCGAA ATGAATCTTA AACATTACTC TCCACCAATC TCTAGACAGT CAGAGTGACG
  GAGAAAGGGG GCAGTGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38013167	NES09393932	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G		A	A		G
ss321138690	CHEV_4_58676844	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27863444					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013167	NES09393932	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58663972 () rs orientation: forward

Symbol	Name	Function Class
Rr592922	regulatory region 592922	1687 bp distal
Rr592923	regulatory region 592923	within coordinates