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rs27863191 SNP Detail
Summary
  • ID
    rs27863191
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:44071207 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAACAAACA AAAACAAGCA
    GAAAGGAAAG GCCACCCTTG GGCCGGAGGA CCAGACAATT AGGGAAATGG GGTCTTATAA
    AATGCCCAAC CCAGAGTCCA CCTGCCAGAA CTTCCAAGTC CGGGGGCCCA TCCCATCCCA
    CCAGGAGCTG TCAGCTTGCT TCAATAGAGC TTTTTACTTC ACTTTCTCTG CCTTTGAGTC
    R
    TCTATCAATT CTATGCCTGT CTCACACACA GAACAACCTC ACCAGCTCTC CCCTACGTTT
    CTTTCACCTT GTTGGAGACA GGCTCTCTAA AAACAAAAAC AAAAACAAAC AAAACAAAAC
    AAAAACAAAA AACAAAAAAA CCCAAGGCTT CCGGATTGCT GTTATTACAG CTGCTCGAAT
    TATAGGACCG GTTTTACTGG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss38003227 NES09457861 PERLEGEN MM_PANEL2 f SNP A A G A A G A A G G A A
ss321100039 CHEV_4_44084079 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs27863191 SNP A A G A A G A A G G G A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss38003227 NES09457861 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:44071207 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14207 CpG island 14207 862 bp proximal
Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase Intron
Noncoding-Transcript-Variant
Rr591149 regulatory region 591149 194 bp proximal
Rr591150 regulatory region 591150 1561 bp proximal
Rr591151 regulatory region 591151 1769 bp proximal
Tssr41482 transcription start site region 41482 1325 bp downstream
Tssr41483 transcription start site region 41483 1371 bp downstream
Tssr41484 transcription start site region 41484 1505 bp downstream
Tssr41485 transcription start site region 41485 1809 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory