CAAACAAACA AAAACAAGCA GAAAGGAAAG GCCACCCTTG GGCCGGAGGA CCAGACAATT AGGGAAATGG GGTCTTATAA AATGCCCAAC CCAGAGTCCA CCTGCCAGAA CTTCCAAGTC CGGGGGCCCA TCCCATCCCA CCAGGAGCTG TCAGCTTGCT TCAATAGAGC TTTTTACTTC ACTTTCTCTG CCTTTGAGTC R TCTATCAATT CTATGCCTGT CTCACACACA GAACAACCTC ACCAGCTCTC CCCTACGTTT CTTTCACCTT GTTGGAGACA GGCTCTCTAA AAACAAAAAC AAAAACAAAC AAAACAAAAC AAAAACAAAA AACAAAAAAA CCCAAGGCTT CCGGATTGCT GTTATTACAG CTGCTCGAAT TATAGGACCG GTTTTACTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss38003227 | NES09457861 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | G | A | A | G | A | A | G | G | A | A | ||
ss321100039 | CHEV_4_44084079 | CHEVERUD | SCREENING_POP | f | SNP | G | A | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs27863191 | SNP | A | A | G | A | A | G | A | A | G | G | G | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss38003227 | NES09457861 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr4:44071207 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi14207 | CpG island 14207 | 862 bp proximal | ||||||
Gne | glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr591149 | regulatory region 591149 | 194 bp proximal | ||||||
Rr591150 | regulatory region 591150 | 1561 bp proximal | ||||||
Rr591151 | regulatory region 591151 | 1769 bp proximal | ||||||
Tssr41482 | transcription start site region 41482 | 1325 bp downstream | ||||||
Tssr41483 | transcription start site region 41483 | 1371 bp downstream | ||||||
Tssr41484 | transcription start site region 41484 | 1505 bp downstream | ||||||
Tssr41485 | transcription start site region 41485 | 1809 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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