rs27863190 SNP Detail

Summary

• ID
  rs27863190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44071268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAATGGG GTCTTATAAA
  ATGCCCAACC CAGAGTCCAC CTGCCAGAAC TTCCAAGTCC GGGGGCCCAT CCCATCCCAC
  CAGGAGCTGT CAGCTTGCTT CAATAGAGCT TTTTACTTCA CTTTCTCTGC CTTTGAGTCA
  TCTATCAATT CTATGCCTGT CTCACACACA GAACAACCTC ACCAGCTCTC CCCTACGTTT
  Y
  TTTCACCTTG TTGGAGACAG GCTCTCTAAA AACAAAAACA AAAACAAACA AAACAAAACA
  AAAACAAAAA ACAAAAAAAC CCAAGGCTTC CGGATTGCTG TTATTACAGC TGCTCGAATT
  ATAGGACCGG TTTTACTGGG TTTGGAGCAC CCAAACTCAA GTCAAGTTTG AAGCGTTACA
  CCAGCAGCAG CAGCAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38003226	NES09457862	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	T		T	C		C
ss321100040	CHEV_4_44084140	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27863190					SNP	C	T	C	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003226	NES09457862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44071268 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			801 bp proximal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				Noncoding-Transcript-Variant
Rr591149	regulatory region 591149			133 bp proximal
Rr591150	regulatory region 591150			1500 bp proximal
Rr591151	regulatory region 591151			1708 bp proximal
Tssr41482	transcription start site region 41482			1264 bp downstream
Tssr41483	transcription start site region 41483			1310 bp downstream
Tssr41484	transcription start site region 41484			1444 bp downstream
Tssr41485	transcription start site region 41485			1748 bp downstream