rs27863189 SNP Detail

Summary

• ID
  rs27863189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44071276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTTATA AAATGCCCAA
  CCCAGAGTCC ACCTGCCAGA ACTTCCAAGT CCGGGGGCCC ATCCCATCCC ACCAGGAGCT
  GTCAGCTTGC TTCAATAGAG CTTTTTACTT CACTTTCTCT GCCTTTGAGT CATCTATCAA
  TTCTATGCCT GTCTCACACA CAGAACAACC TCACCAGCTC TCCCCTACGT TTCTTTCACC
  Y
  TGTTGGAGAC AGGCTCTCTA AAAACAAAAA CAAAAACAAA CAAAACAAAA CAAAAACAAA
  AAACAAAAAA ACCCAAGGCT TCCGGATTGC TGTTATTACA GCTGCTCGAA TTATAGGACC
  GGTTTTACTG GGTTTGGAGC ACCCAAACTC AAGTCAAGTT TGAAGCGTTA CACCAGCAGC
  AGCAGCAGCA GCAGCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38003225	NES09457863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27863189					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003225	NES09457863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44071276 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			793 bp proximal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				Noncoding-Transcript-Variant
Rr591149	regulatory region 591149			125 bp proximal
Rr591150	regulatory region 591150			1492 bp proximal
Rr591151	regulatory region 591151			1700 bp proximal
Tssr41482	transcription start site region 41482			1256 bp downstream
Tssr41483	transcription start site region 41483			1302 bp downstream
Tssr41484	transcription start site region 41484			1436 bp downstream
Tssr41485	transcription start site region 41485			1740 bp downstream