rs27863188 SNP Detail

Summary

• ID
  rs27863188
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44071580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGAATTA TAGGACCGGT
  TTTACTGGGT TTGGAGCACC CAAACTCAAG TCAAGTTTGA AGCGTTACAC CAGCAGCAGC
  AGCAGCAGCA GCAGCAGCAA TCTCCCTGGC TCCGAGAAAT GGCAATGCTC ACAAACTACA
  TTCAACTCAA TTGTGCTTTT ATAAATGCTG CAAAAGGATA AGTGAATGTC CCAACCACGA
  R
  AAAGTATAAG CACACTTGTG CAAGCAGTCA CCAGCAGAGA AACAACAGTA AAGTAAACGT
  TTGCTAAGTG CTTCCTCCAG CAGTGGGCTA ACACGGCGTT AGACACGTTA TTCCATCCTC
  ATTTTCTCTA CTATACAGAC AGGGACACTG AGGTGTAGAA AAAAAAATCC ACTTGATCTA
  AATCACAGTT AGTTAATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38003224	NES09457864	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27863188					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003224	NES09457864	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44071580 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			489 bp proximal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				Noncoding-Transcript-Variant
Rr591149	regulatory region 591149			within coordinates
Rr591150	regulatory region 591150			1188 bp proximal
Rr591151	regulatory region 591151			1396 bp proximal
Tssr41482	transcription start site region 41482			952 bp downstream
Tssr41483	transcription start site region 41483			998 bp downstream
Tssr41484	transcription start site region 41484			1132 bp downstream
Tssr41485	transcription start site region 41485			1436 bp downstream