rs27863186 SNP Detail

Summary

• ID
  rs27863186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44072295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCGAGGT GCAAAGCCGA
  TCTATTCTTT CCTCTAACAA TTTTACAAGC CTGTTCAAGG ACGGATATAA ACGTCTATCA
  AATTTCCAAG GACACCGAGT GTCCAGACAG TCAGAGTTGG GCAAGCCTCC AAGAAGTCCC
  TCGGTGCAAA CCCTCTCCCC ACCTAGGCAG TGCTGGGCCC CCGCAGCTAT CTCACGTCTC
  Y
  GCCCAGGGAC CCAGGGCCGT GCCGCCTGCT GCGTGCACGG ATGGGCTGGA CCCTGGCCAG
  GCCTACCTCT GCAAGCCCCG GTCCCCATTC ACCCGCACGC TGAGTCTGAC AGCTCCGGGA
  TCCCACGCCG GAGCAACGCA CCGGGCGGGA GAGGCGCCCT GCTGCGTAGA ACCCGGACGC
  CCAGCGCGAG GCCCACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38003222	NES09457831	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27863186					SNP	C	C	T	T	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003222	NES09457831	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44072295 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			within coordinates
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				Noncoding-Transcript-Variant
Rr591149	regulatory region 591149			within coordinates
Rr591150	regulatory region 591150			473 bp proximal
Rr591151	regulatory region 591151			681 bp proximal
Rr591152	regulatory region 591152			1428 bp proximal
Tssr41482	transcription start site region 41482			237 bp downstream
Tssr41483	transcription start site region 41483			283 bp downstream
Tssr41484	transcription start site region 41484			417 bp downstream
Tssr41485	transcription start site region 41485			721 bp downstream