rs27860688 SNP Detail

Summary

• ID
  rs27860688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:49485147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAAACC AAAAGAGCAC
  ATGAAAGAAG ATCATCTGCC ATAAGTAGGC TTCATTCCAG AGATGCAAGG ATGCTTCAAC
  ATACAAAAAT CTGTCAATGT AATCCTCTAC ATAAACAAAC TGAAAGAAAA AAAAATATGA
  TCTAAAACCG AGCCAAATAA ATATCTATTG CTGGCTTGTT TGTTTGAGTT ATTATGTTAC
  Y
  CTGAACCACC CTCCAAACTG ACAAAAACAA TTACAAATCT GAACAAAGAG AAAAGATTAA
  AATGTACAAT CAACACTATT TGGAACTGTG GTTTGACTTA TCCTGTGTAC CTGACCTTTT
  GAAGGATCCC AGTAACTAAT CAACTGACAC TTTAAGAATT CTTAGATGTC AGAACTGCTT
  GATTCTAAGA CCTTCAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37982127	NES09422946	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27860688					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37982127	NES09422946	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:49485147 () rs orientation: forward

Symbol	Name	Function Class
Gm33009	predicted gene, 33009	within coordinates
Rr592067	regulatory region 592067	302 bp proximal