rs27860225 SNP Detail

Summary

• ID
  rs27860225
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:68717459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGTGCA CTGGAATAAA
  AATATAGATT CTTAGATATA GATGGGCAGC AAAATGTGGA GCCTTCAGTT GCATCGCTTA
  TACTTCACTG TCTTCGGCCA TGACCTTGGT TCTCTTGGAA ATGCAGACAT TGCTCTGTTA
  TATTAGTAAT GAGTCAGGAG ATGCTCTAAT GTACATTTTC TTCTATTTGG AGAGAAAACC
  M
  TTATTGAATG CATAACATCA TTATTTACCT TTCTTATATC CTTCATTTAT TTTCTTTTCA
  TTTATTGAAA TATTTATGAA CTCTATTTAT GAACATGTCC TGAGCTATCC AATGTTTTTA
  GAGATTTTTT TATGATATTT TACTTTTTGA AAAAATAGGG TCTCTCTAGG CAGCTCTGGC
  TGTCCTGAAG CTCACTGTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38034956	NES09375223	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	C	A	A	C		C	A	A	C		C
ss321155291	CHEV_4_68460256	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27860225					SNP	A	A	A	A	C	A	C	A	A	C	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034956	NES09375223	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68717459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9330154F10Rik	RIKEN cDNA 9330154F10 gene			1330 bp downstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1			Intron
				Noncoding-Transcript-Variant