rs27859545 SNP Detail

Summary

• ID
  rs27859545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48632250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTAAAG TTCCTTGGAG
  TCCTGGGTTC CAAAAGATAA CAGTTAAATG CTTTGAGAAC TATACATGCA GAAATGGGTA
  TGTTTTAAGA ACCTTGATAG GGGCCAAAGT TAAATGTAAT TATAAGGAAC ATTCTTAGAA
  TCTTTCCCAT GTCATCTACA GCATCTAGAA TAACTAATGT AATCATTTCT ATACTGTACA
  Y
  ATGCTTTTCT TGTGGCCTCA TGTAAGATAT GTAAGCTGGA TGGGAGCATG AGATGATGAA
  TACTACAGTA AAGAGTAATC CCTGAATAAT CTTTAACAAT TTAAACTTTG TTATGAAAAT
  TTTGCAAATT AAAAGCATAA TCTTGAGATC CAGTTTACAG AAATGAGAAC ATACATGTAA
  TAAAATTATT GTTTCTGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37985168	NES09440169	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27859545					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985168	NES09440169	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48632250 () rs orientation: forward

Symbol	Name	Function Class
Rr592000	regulatory region 592000	1317 bp proximal
Rr592001	regulatory region 592001	1587 bp proximal
Rr592002	regulatory region 592002	1906 bp proximal
Rr592003	regulatory region 592003	1987 bp proximal
Tmeff1	transmembrane protein with EGF-like and two follistatin-like domains 1	Intron