rs27859542 SNP Detail

Summary

• ID
  rs27859542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48635244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACTGTAC ATGGCTGGAG
  TCACTGTTGG AATTTGATCG ATGGAGCTAC GTGTTTTGAT GGCCCCATTC TGCTGCAGAT
  AGTCATTTGG GTCATTTACC GTCTTCTCGT AACAAACACT GTGTACTTCA TGTCTCCTGG
  CGCACACCGG TAAGGTAAGG GACTTTCAAG TCCGCAGAAG AGCGACTTCG GGAGGCAAGT
  S
  CACATCTAGG TGTTCCCAGG AATGAGCATT CTCAGGACGG TCATTCCAAT AGGCTCGCGT
  GCCAGCACCT GCTCCCCACG CTACCCTGTG CTTGATGTTC CCTTTGCTTT AATTCGTATC
  AACCTCGAGA CGTCGGTACC GTGTTTGTGG TCTTAGCTTC CAATGTCGTG ATTATAAAAG
  ATAAACCTTG TTAAGTTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37985164	NES09439992	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27859542					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985164	NES09439992	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48635244 () rs orientation: forward

Symbol	Name	Function Class
Rr592000	regulatory region 592000	1240 bp distal
Rr592001	regulatory region 592001	1386 bp distal
Rr592002	regulatory region 592002	903 bp distal
Rr592003	regulatory region 592003	986 bp distal
Tmeff1	transmembrane protein with EGF-like and two follistatin-like domains 1	Intron
Tssr37248	transcription start site region 37248	1651 bp upstream