rs27859541 SNP Detail

Summary

• ID
  rs27859541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48635262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTGTT GGAATTTGAT
  CGATGGAGCT ACGTGTTTTG ATGGCCCCAT TCTGCTGCAG ATAGTCATTT GGGTCATTTA
  CCGTCTTCTC GTAACAAACA CTGTGTACTT CATGTCTCCT GGCGCACACC GGTAAGGTAA
  GGGACTTTCA AGTCCGCAGA AGAGCGACTT CGGGAGGCAA GTGCACATCT AGGTGTTCCC
  R
  GGAATGAGCA TTCTCAGGAC GGTCATTCCA ATAGGCTCGC GTGCCAGCAC CTGCTCCCCA
  CGCTACCCTG TGCTTGATGT TCCCTTTGCT TTAATTCGTA TCAACCTCGA GACGTCGGTA
  CCGTGTTTGT GGTCTTAGCT TCCAATGTCG TGATTATAAA AGATAAACCT TGTTAAGTTA
  CACACATCTG TTCAAGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37985163	NES09439993	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27859541					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985163	NES09439993	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48635262 () rs orientation: forward

Symbol	Name	Function Class
Rr592000	regulatory region 592000	1258 bp distal
Rr592001	regulatory region 592001	1404 bp distal
Rr592002	regulatory region 592002	921 bp distal
Rr592003	regulatory region 592003	1004 bp distal
Tmeff1	transmembrane protein with EGF-like and two follistatin-like domains 1	Intron
Tssr37248	transcription start site region 37248	1633 bp upstream