rs27853321 SNP Detail

Summary

• ID
  rs27853321
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56361394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAAAACG TGAGCAAGAA
  GCGTTGAGCA GAAACAAATG CAAAAGAAAA TATAAAATTA GAAAACAAAT TAATGGGATT
  AAAGTTGTTT TGCTGTAAAG CTAACAACAT TGACAAACCT TTAACTGGAC GGACCAATAG
  AAAAGAGCGT CGCCCTGTCC CGGTGGCCAT CTGTTACTGA TCCAAGTCAG GAAGAAAATC
  R
  TCTTTGCTTA TAATATCCAT CAGACCTAAG ACACATCGGA TGCAACTTCT CCTTCTGTGG
  GGCACTATGG AAATGCATAT GCTTTCTTCT AATAGTATTC AAGAATAATC ACGTTGCATA
  CTAGTGTACA TAGTCTTGTC ACCAAAGTAG TGGGTGTCTA TGGATCATCT GGTGCCTTTA
  CAAAGGGTAA ATTTGTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38022950	NES09399194	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853321					SNP	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38022950	NES09399194	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56361394 () rs orientation: forward

Symbol	Name	Function Class
Rr592565	regulatory region 592565	807 bp proximal
Rr592566	regulatory region 592566	927 bp proximal