rs27853309 SNP Detail

Summary

• ID
  rs27853309
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56362319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGTAGT GAGGCTTCAA
  GTTCAGCGTG CTCTCTGTCC TGCTAAGTGG CTCCTTCCAA TACCACAGAT AAAGGCTAGA
  AGAAAGAGCA AAGTCAACTG CTATATCCCA GTTTGAACTT GATGACTTCT GGCCCTGAGA
  AATGTTTCCC TCCAAAGATC TTCGAGTTTC CGAGCTGGCA CTAGCCAAAC GCAGAGTTAT
  K
  TCTAGTGCCA CCTAGTGAAA TGAATGAATA CTTAGCTTTT ACAAACCAGA ACTAAGAAAA
  GGCTAAAAGC ATAAATCAAT AAACATAAAA GAAGGGAAAA ATATAACTGG AGCGAGGGAA
  TGCCTCACCC ATTATTTCAG TAATGGGATC TATGGTTCAG CTAATGGAAG GGATCTTTAT
  ATTTAAACAG TTCTTCATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38022938	NES09399231	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853309					SNP	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38022938	NES09399231	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56362319 () rs orientation: forward

Symbol	Name	Function Class
Rr592565	regulatory region 592565	within coordinates
Rr592566	regulatory region 592566	2 bp proximal