rs27850933 SNP Detail

Summary

• ID
  rs27850933
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59378558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTTACA GTGTTGTGAG
  CTGCCACGTG GGTACTGTGG ACGGACCCTC TGCAAGCAGA GTAAGTACTG TCTACTAAGC
  TGACTCTCTG GTCCTGAAGT CTCTGCAAAA CAGAACCCAT GTGAGCTGTG CAGGCAGCAT
  TGTTGGCAAA GTGCTTGCTG CACCAGCCTG AGCATAAAGT TCACACAACT CACTCTGATT
  R
  TGGAATATTT TTTAAATCCC ATAAATTATA TGCAGTGATC TATTCCTACT TTTCGCATAC
  AAGCCTGTTT TTGTACATGC ATGTGTTTAT ATGTGTGTAT GGTTGCGTGT GTCTAGGGTG
  CATGTGTGTG CAGAGGAGCC AGAGGTCAAC TCTGGGTGCC CTGAATTATT TATGTTTAAC
  AAAAGGTCTC TCACTGAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010964	NES09404484	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850933					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010964	NES09404484	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59378558 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593055	regulatory region 593055			1934 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant