rs27850929 SNP Detail

Summary

• ID
  rs27850929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59379369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTCCCG CGTAACCACT
  GTTAGCCGAT TCAGCAGCCA GACCAGTTCA TAGTAAATAA GAAGCCACCC TTCAGCTCCT
  CTGTTCCTCC TCTTTCTTAA GCAAAGGAAA GAAAGGGCTG TTGGGCTTTC TAGCAAATAT
  AAGCTGTAAG ATCCTCTATC TCTTGTAGAT CTGGAAACCC ATGACATCAT CATCTAATGT
  Y
  CCTTCTGCTA CCACCACTTG TCTCCAAGGA CTCAGCTGAG AAACAGTTGC CAGCGCCATT
  CAGCTGGACC TCAACAGAAT AAGAATTTTT CCTACTACGC CTACTCTGGC TCTACCCACG
  GAGTAGCTTC ATCCCTCTGC CCACACCAAC AGAAATCCCC TCCCCTCTTG GTTCTCCACA
  TCTGTGCTCA GGACTCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010960	NES09404373	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850929					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010960	NES09404373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59379369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593055	regulatory region 593055			1123 bp proximal
Rr593056	regulatory region 593056			1856 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant