rs27850920 SNP Detail

Summary

• ID
  rs27850920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59380318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACGAGCA ATAAAGAGAA
  TGCCAAACAG AAATGCCAGT CCCACACTCA TACCTGGTCA GATGGCATAC ATGCTAGATG
  TGAAATATGT GTATAGCTCA AAAATCCCAC CCATTTTTTA AAACAGGGCA ATAGAACCAG
  AAAACAATTA GACTGACTAA GAACCTTCAT ATTTCTCATT GAAACCGTAT AGCTGGAAGA
  Y
  AGCAGCACTA AACAGTGTGG TTTAGTTGGT GTTTTCCTAG TTATAGAAGC ATCATTGGTT
  TGCCTTCCAC CATGGTCACC TGCGTGATAA CAGTGTTCAC GGCCTGCTAG AGAAAACAAT
  TCTTTTCTAA ATGAATGGAG GTTGAAAGCA TCTTCTAACC TTGTCTTGGC CTTTGTGTTG
  GCTCTAACTG AAACGTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010951	NES09404397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850920					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010951	NES09404397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59380318 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593055	regulatory region 593055			174 bp proximal
Rr593056	regulatory region 593056			907 bp proximal
Rr593057	regulatory region 593057			1800 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant