rs27850915 SNP Detail

Summary

• ID
  rs27850915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59381171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA TTGCCTGACC AGGCAAAAAA
  R
  GGAAAAGATT CCTGCCTGCG GGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38010946	NES09404205	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G		A	G	G	A		A	G	G	A		A
ss45644060	mCV24618999	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss146402038	ENSMUSSNP846600	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321140608	CHEV_4_59394043	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27850915					SNP	G	G	G	G	G	G	A	A	G	G	A	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010946	NES09404205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59381171 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593055	regulatory region 593055			within coordinates
Rr593056	regulatory region 593056			54 bp proximal
Rr593057	regulatory region 593057			947 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant