rs27850912 SNP Detail

Summary

• ID
  rs27850912
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59381290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGA GGCCCAGAAA TGAGCTCCGA
  M
  TGGAAGCTTC CTTAAGGCAT ACAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss38010943	NES09404209	PERLEGEN	MM_PANEL2	f	SNP				A	A	A		A	C		A		C
ss45641201	mCV24619007	ABI	CRAMUS_MOUSE	f	SNP	A	A	A				C	A
ss146402043	ENSMUSSNP4794050	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					A
ss321140611	CHEV_4_59394162	CHEVERUD	SCREENING_POP	f	SNP										A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27850912					SNP	A	A	A	A	A	A	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010943	NES09404209	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59381290 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr593055	regulatory region 593055			within coordinates
Rr593056	regulatory region 593056			44 bp distal
Rr593057	regulatory region 593057			828 bp proximal
Susd1	sushi domain containing 1			Intron
				Noncoding-Transcript-Variant