rs27850530 SNP Detail

Summary

• ID
  rs27850530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58489955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGAACA GAAATGCCAA
  ATAAAAGAGA TCACAGACAT CCACTCAGCA TCTGATGAGA GAGTCAGAGA TAACAAGAAG
  GAAACGGAGG CACGGATTAA AACAAACTGC TAGTCATTCT GCAGATACTA GAAGGGCTGG
  GGCAGAGCTG GAGAGGCAGA GCCCCACTCG CCGACAGAAA CGGGATTCCT TAAGAAGACC
  R
  TGCGTTACCG ATTTATGTTT CTATATATTT CAAAACAACG CTAAAACAAA ATGTTCCTAT
  AGCTTAACGA GATTTTGGAA TCTCGTGGGT AAAAGGTTCC AGAAACATAA AGTAAAACAA
  AGTTCAGCAA ATGGTTAAGG TGGAGAGAAC AAGTCCGATA GAGTTCCTCT GTGCTTCTGC
  TGTGAGATCC TTGGGACGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38013862	NES09401740	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850530					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013862	NES09401740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58489955 () rs orientation: forward

Symbol	Name	Function Class
Lpar1	lysophosphatidic acid receptor 1	Intron
Rr592898	regulatory region 592898	501 bp proximal