rs27850527 SNP Detail

Summary

• ID
  rs27850527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58490395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCACAGG GGTCACAAGT
  CACAGCTTTA CATTTTGATG CACAGCACTA GCAAAATTAC AGGTATGAAG CCGCAACAAA
  AGAAACTTTA TGGTTGGGGG TCAGCACAAC ATGAAGAACT GTATTAAAGG GTCAGAGAAC
  TAGGAAGGTT GAGACTCGCT GCTTTAGGAC AAAACTCAAA GGTATACGAA ACCCTGCTGT
  R
  TAGAGAAACC CTAAAGGAGC CTTGAATTCC ACAGCCATAG ACGGCCTCAC AGGCCTTTAG
  ATAATTGGTC TTCAGCTGGT GGTGCTATTT TGGAGAGACT CTTAGGGACG TGAGACTTAG
  CTGGCTCACA TAGGGGTGGG GCTCACATAG GACTGGAGCT CACATAGGGG TGGGGCTCAC
  ATAGGGGTGG GGCTCACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38013859	NES09401702	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A		G	G	A		A
ss146392625	ENSMUSSNP1045636	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G					A
ss321138267	CHEV_4_58503267	CHEVERUD	SCREENING_POP	f	SNP											G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27850527					SNP	G	G	G	G	G	G	A	G	G	G	G	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38013859	NES09401702	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58490395 () rs orientation: forward

Symbol	Name	Function Class
Lpar1	lysophosphatidic acid receptor 1	Intron
Rr592898	regulatory region 592898	61 bp proximal