rs27846754 SNP Detail

Summary

• ID
  rs27846754
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43904658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTTTTTG TATAGAAAGG
  AAATGTGTAT GTAGTCCTCA CCCACTCTTA CCACCTTTAG CGTGCACTTC ACTCTGCCCT
  GGACGCCAGT GTTGAGTATG TGTTTGTTTA TGCCTGCTGG GGTTGTGCCA GGTCCGCAGC
  GAGTATTCAG TAAATGTATG CTGAAAGATG TGTTTGCATC AAATTAACCG TGGTTCTAGA
  K
  TTACTTTGTG TTAGAAGCAT AAAAGAAGGG AGGTGGGGAA CAGTCTAAGG GACCAGAAAA
  AGCAGAACCA GCCATGTCAC TGGCAGCTGG AGGTCCCCTA AGCTGTAGTG TAATGTCAGT
  CTGCTGCAGT GGTTCTGGTG GGACAGCTAA CAGCATAGGC TTTGGACAGC TGTGCTGTCC
  TCACACAGCT TTTGGCTATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003975	NES09463994	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27846754					SNP	G	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003975	NES09463994	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43904658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56265	predicted gene, 56265			420 bp upstream
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591101	regulatory region 591101			687 bp distal
Rr591102	regulatory region 591102			1787 bp proximal