rs27846753 SNP Detail

Summary

• ID
  rs27846753
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43904745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTTGAGT ATGTGTTTGT
  TTATGCCTGC TGGGGTTGTG CCAGGTCCGC AGCGAGTATT CAGTAAATGT ATGCTGAAAG
  ATGTGTTTGC ATCAAATTAA CCGTGGTTCT AGAGTTACTT TGTGTTAGAA GCATAAAAGA
  AGGGAGGTGG GGAACAGTCT AAGGGACCAG AAAAAGCAGA ACCAGCCATG TCACTGGCAG
  S
  TGGAGGTCCC CTAAGCTGTA GTGTAATGTC AGTCTGCTGC AGTGGTTCTG GTGGGACAGC
  TAACAGCATA GGCTTTGGAC AGCTGTGCTG TCCTCACACA GCTTTTGGCT ATTTTAATAA
  AAGTACACAG GTTGGAGATG TGGCTTAGAA GCCCTTGGCT CGATCCCTAG TGGGTACACA
  CTTGCTCTTA CACATACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003974	NES09463995	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27846753					SNP	C	C	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003974	NES09463995	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43904745 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56265	predicted gene, 56265			333 bp upstream
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591101	regulatory region 591101			774 bp distal
Rr591102	regulatory region 591102			1700 bp proximal
Rr591103	regulatory region 591103			1915 bp proximal