rs27846751 SNP Detail

Summary

• ID
  rs27846751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43904949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCCCTA AGCTGTAGTG
  TAATGTCAGT CTGCTGCAGT GGTTCTGGTG GGACAGCTAA CAGCATAGGC TTTGGACAGC
  TGTGCTGTCC TCACACAGCT TTTGGCTATT TTAATAAAAG TACACAGGTT GGAGATGTGG
  CTTAGAAGCC CTTGGCTCGA TCCCTAGTGG GTACACACTT GCTCTTACAC ATACACAAAG
  Y
  GTAAGAGTCT AAATATAAAG TATGTATCAG TTCACACTGA GGAAGTGCCA AGAGTTGTTG
  GAGTAAATAG CAGAGTGTGA TGGGAAACTT AAGGAATGGT GACCCTCCAC AGAGGTGTAT
  ATATCAGATC TGGCCGTTAC CTGCAGCTGA TGAGCTCCAA AAAGAGCGAA ACCTGTTGGG
  TCCTGCAGTA CTGGCTTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss38003972	NES09463998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27846751					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003972	NES09463998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43904949 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56265	predicted gene, 56265			129 bp upstream
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591101	regulatory region 591101			978 bp distal
Rr591102	regulatory region 591102			1496 bp proximal
Rr591103	regulatory region 591103			1711 bp proximal