rs27846611 SNP Detail

Summary

• ID
  rs27846611
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43924007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGTAG TTGTGTTCCC
  GACTGGCACT CCACTTGACT TAGGGATTCT TTCTGTGCCG TCGCCTTCTC CTCCTTGCTT
  GTCCTCTCAG CTGCCACTCT GTCTTTATTA TCATCACCCA GTGGGAGTCA GTGGCCAGTC
  TTCGGGTCCT GCTCTTAGGA AACAGTGCTG AATGGTTTAC TTAGGAGATG TCAGACAAGT
  R
  CCTGGTGGGA GAAGCAGACC CTCACTGCAC AGCCCTCTGC TGCTCTCCAG GCGTCTGCTT
  TTCCAAGACC AAGTCCACAC CAAGCCCTAA ACCCTTGGTG TGCGGCTCAG TGCTGCTCAG
  TTCAGATTAA TTACCGTCCA GATCATTTTT TAACTTTTCT TATTTGGTTT AATTTTGATT
  TTGGAGTCTT CCTGCCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003830	NES09463260	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27846611					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003830	NES09463260	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43924007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591105	regulatory region 591105			1698 bp proximal
Rr591106	regulatory region 591106			1981 bp proximal