rs27846604 SNP Detail

Summary

• ID
  rs27846604
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43924951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGGAAGG AGAGCAGAGG
  CAACCGCCTC GGGCCTTGAA AATGGCTTAC AGTTTGCAAA GCAGACTGGC CAGCTCAAGT
  TCCTTTTAAA GGGGGTAGAC GCGACACCAT GCTTGGAGCA ATAAATGTAA GTCTCAGATT
  ACAGGAAGTT AGGCTTTGTA GCTGGAAGTT TACTGTGTAG CTGGAAGTCC CTGTGACTGC
  W
  GGGAAAGCTC AGCAGGTAAT GGACGCTTCT GAGAGGTTTA AGAAACACAG CTTTGACCAG
  ACAACGTGAG ACAGAACCAT GAATACAAAA TGTTCTTTTT TCTTTCAAGA TCAGATTGTG
  TAGAGATTCT CAAGAAATGT GGAGACCAGA ATAAATTCCC TGAAGAACAC ACAGCTGAAA
  GTATCTGTGA GTTTCTGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003823	NES09463211	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27846604					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003823	NES09463211	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43924951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591105	regulatory region 591105			754 bp proximal
Rr591106	regulatory region 591106			1037 bp proximal