rs27846598 SNP Detail

Summary

• ID
  rs27846598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43925725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCTCCCC TGAGGGTCCA
  GAATTTTGTC CCCTAAGTGA CTAGACCCTG TCAAGTTGTC ATTGCTATCT TAAAATGAGT
  AAGCAGAAGC TGTAGTTTAT CTTTCGGAGG AAAGATGAAC TATTTGCCAG TCAGGAACTG
  TAAAGATGGA AGCGGAAGAC AATGTCATCA GAAGTCATGA TGTGACCAGA ACGTGGAATT
  Y
  CCCCTAGGAA ACTGTCAGCT CTTGTCATCC ATATATCAGA ACATGAGCAG GCCTGGATTA
  CACTTACCAA ATAGAGAAGG GAAGAAAGAG CTCTCCCCTG GGCTCGCACA GGGAAGTGGA
  ACTTGTCTTA CTACTTGAGT TTCTTCCTGA CAGACACTTC TGCCAAGAGC TACAGCAGTA
  GGTTGGTACC TCCTTGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38003817	NES09463187	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27846598					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003817	NES09463187	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43925725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591105	regulatory region 591105			within coordinates
Rr591106	regulatory region 591106			263 bp proximal