rs27846597 SNP Detail

Summary

• ID
  rs27846597
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43926202 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACT CACTCTGTTC CCTGCACTTC
  R
  CTGGCCTGCC AAGGATGCTG GCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38003816	NES09463188	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	G	G		A	A	A		A	G		A
ss45568059	mCV22986110	ABI	CRAMUS_MOUSE	f	SNP	A	G					G	A
ss146244491	ENSMUSSNP3539827	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
ss321099371	CHEV_4_43939074	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27846597					SNP	A	G	A	G	G	G	G	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38003816	NES09463188	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43926202 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reck	reversion-inducing-cysteine-rich protein with kazal motifs			Intron
				Noncoding-Transcript-Variant
Rr591105	regulatory region 591105			within coordinates
Rr591106	regulatory region 591106			193 bp distal
Rr591107	regulatory region 591107			1732 bp proximal
Rr591108	regulatory region 591108			1806 bp proximal