rs27841235 SNP Detail

Summary

• ID
  rs27841235
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48402774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCACTCAT GGTTGGAATG
  TCCCACGAGC AGTGTCAAAC CTTCCTCAGA TCTCATCATG GGCAGTGCAC GATGCCCTTT
  CACCAGCATG CTAATTGTGA TTACTCTGGT TAAGAACCAT CTGTTTTCTC CATTGTACAC
  TTCATAGCAT CCCTTCCTTA TTGCTGATCA ATCCGAGGAG AAATTCTTTC TTCTGAGTTA
  W
  TATAACCATG TGTCTGCACC TGCTCCCTCC AGTACAGCTG ACTTGTTCAT GCTTGCAGGG
  ACGAACAGCT TTGCACTGGT CCTGTAACAA TGGCTACCTT GATGCCATTA AACTACTGCT
  AGATTTTGCT GCTTTCCCTA ATCAGATGGA GAACAATGAG GAGAGGTAAG TCGTTGACGG
  GGAGAGGGAG TGAGTATAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss37985859	NES09449797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs27841235					SNP	T	T	T	T	A	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985859	NES09449797	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48402774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68641	predicted gene, 68641			within coordinates
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591970	regulatory region 591970			247 bp proximal
Rr591971	regulatory region 591971			499 bp proximal