rs27841223 SNP Detail

Summary

• ID
  rs27841223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48404744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAATTGGA GGAGTTATGC
  ATTATATTTT ACTAAGAAGT CACTGCTATA TTTTTGTTAG CATATCCTTG CGGCTGTGCC
  TGTGTTAGGT GTAGATGAAT GCTGAGACAC AGAGAGATGG ACTGACAGGA CTCGACAATT
  AGCTTTAAAA TATTTCCACA AAAATTCAAA GGAAGAAATT AAAAGGAATA AACATAGCAA
  Y
  AAAACCTTAC TAAATACACA TATTGTATGC AAATTGATCT CACTGGCACT TCTGTTCTAC
  CAGAATGTAT TCAAGAGTTG ATAGAAAAGG GGGTTATATT AAACTGGGAG CTACTTGCAA
  TCAATTATAG TCTACATTCT GTACAAACTG GTTGTGTAAT TGTCAACACG TTGCTTAACT
  TTCCTGGGTC TCTATTTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37985847	NES09449749	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27841223					SNP	T	T	T	T	T	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985847	NES09449749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48404744 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68641	predicted gene, 68641			1461 bp upstream
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591970	regulatory region 591970			1472 bp distal
Rr591971	regulatory region 591971			1173 bp distal
Rr591972	regulatory region 591972			1332 bp proximal