rs27841217 SNP Detail

Summary

• ID
  rs27841217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48406756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTTGGGA CTGGCTTACA
  GGTTCAGGGG TTCAGTCTGT TTCAAGGCAG GAGCATGGCA GTGTCCAGGC AGACATGGTG
  CTGGAAGAGC CGAGAGTTCT ACATCTTCAT TTGCAGGCTG TTAGGGGAAG ACTGACTTCC
  AGGGAACTAG GACTAGGGTA TTAAAGCCCA TGCCCACAGT GACACACCTA CTCCAACAGG
  Y
  GCAAGCATAC ACAAACCACA GGCTACATAG AGAAATCCTG CTTCAAAAAC AAGTAAACAA
  AAAAGTCTCT TTTACCCAGG TGGCTACCAA CACCATTCAG TCCACAATTC AGCTCCCCGC
  AGTGACTTGT AGTAGGGACC CTCTGTGTCA TGGAGTCAGT CTCCCCTATC TGAAAACAGG
  CTTCTTTTTG TAAGCATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985841	NES09449635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27841217					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985841	NES09449635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48406756 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591972	regulatory region 591972			659 bp distal
Rr591973	regulatory region 591973			583 bp proximal
Rr591974	regulatory region 591974			735 bp proximal
Rr591975	regulatory region 591975			1162 bp proximal