rs27841214 SNP Detail

Summary

• ID
  rs27841214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48407718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGCTAG GTGCTAATGT
  GTCCGCTCTA CTGTGCCTTG AATCACAATC CATTCCAAAT CAGTCTTCCT TTAACCTTAG
  GTACACACCC CTTGATTATG CATTGCTTGG TGAGCGCCAT GAGGTGATCC AGTTCATGCT
  GGAACATGGT GCCCTGTCCA TCGCAGCTAT ACAAGACATC GCTGCCTTCA AAATCCAAGC
  R
  GTCTACAAAG GATACAAGGT CAGAAAAGCC TTCCGAGACC GGAAGAACCT CCTCATGAAG
  CACGAACAGC TGAGGAAAGA CGCTGCAGCC AAGTAAGTGT GAGCCACCGA GATCGCTCGC
  TCTAAGCTGA GAAGGGAAGC TGGGTGGGCG TGGGAGGGAG GGGCCAGAGC TCGGAATGGA
  CCAACGCTGT CACCTTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985838	NES09449584	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27841214					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985838	NES09449584	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48407718 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Invs	inversin			Coding-Synonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr591972	regulatory region 591972			1621 bp distal
Rr591973	regulatory region 591973			358 bp distal
Rr591974	regulatory region 591974			206 bp distal
Rr591975	regulatory region 591975			200 bp proximal