rs27841209 SNP Detail

Summary

• ID
  rs27841209
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:48407977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACGAACA GCTGAGGAAA
  GACGCTGCAG CCAAGTAAGT GTGAGCCACC GAGATCGCTC GCTCTAAGCT GAGAAGGGAA
  GCTGGGTGGG CGTGGGAGGG AGGGGCCAGA GCTCGGAATG GACCAACGCT GTCACCTTCT
  TGCTCTGCCC TCTATCTTAA GAGGACTTAA GGAAGGACGA CCCAGCAACG AGTAGGCTAC
  M
  AATAGAGAAC TCATCTTCTT GCCCCTCCTG GCATGTGGGC AAGTAAGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTCTGTGTGT GTCTGTGTGT GTCTGTGTGT
  CTGTGTGTGT GTCTGTGTGT GCGTGCTCAT GCGCTGATTG ACAGGTGTGT AATGTAGCAT
  GTGCAGTCTC TCCTCCCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37985833	NES09449589	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		C	C	C	C	C	C	A	C	C
ss45703939	mCV23268757	ABI	CRAMUS_MOUSE	f	SNP		A	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27841209					SNP	A	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37985833	NES09449589	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48407977 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Invs	inversin			Intron
				Noncoding-Transcript-Variant
Rr591972	regulatory region 591972			1880 bp distal
Rr591973	regulatory region 591973			617 bp distal
Rr591974	regulatory region 591974			465 bp distal
Rr591975	regulatory region 591975			38 bp distal