rs27839502 SNP Detail

Summary

• ID
  rs27839502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:70293818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAGGCC TGGGAGTCGC
  TGGTCTACCC CTAAGTCACA ATAGGCAATT TGCAACCACC AGACCCTATT ATAGCCCAGC
  CTGGAGAGTG ATGCAAACAT GTTCCAGTCC GTCCACGTCC AACAGAAGTT CCACACCATG
  ACAAGGGAAA CACTTATATA CAGACGTCTA AGCAGCTCTT GTGGACGACC TGGAAAGACA
  Y
  TGCACTGTTC TTGGGTAAAT CTAAGCACAC TTTGGTATCC CCACTTGTCA CACATGCCAT
  TACCACACCT CCACAACACA AAATGTCTAC AAGACAGTCT TTCACAAGAG GGGAGAGCTG
  GCAGCTCCTC TAAAGAAAAC ATATAGTATC TGCAAACCAT GAAGAGCTGT CAACAGAAGA
  CCCCAGCTAG GTCTAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38029631	NES09372850	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27839502					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38029631	NES09372850	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:70293818 () rs orientation: forward

Symbol	Name	Function Class
Cdk5rap2	CDK5 regulatory subunit associated protein 2	Intron
Rr593865	regulatory region 593865	1824 bp proximal
Rr593866	regulatory region 593866	1953 bp proximal